M. musculus piRNA Sequeces

This page contains the piRNA sequences from M. musculus. Sequences were collected and processed from this study:

Perera BP, Tsai ZT, Colwell ML, Jones TR, Goodrich JM, Wang K, Sartor MA, Faulk C, Dolinoy DC. Somatic expression of piRNA and associated machinery in the mouse identifies short, tissue-specific piRNA. Epigenetics. 2019 May 4;14(5):504-21.

Please use the sidebar to select for mouse piRNAs from each tissue type. In the data table shown below, the first column contains species information, the second column shows the primary tissue used for piRNA generation, and the third column indicates the piRNA identification (piRNA ID) number generated by us to annotate each piRNA transcript; details about the piRNA ID assignments can be found here. The fourth column contains the piRNA sequence, the fifth column shows the sequence length, and the last column indicates the piRNA expression level for each tissue type. Details on the expression levels can be found in the reference publication. The up and down arrows next to the title of each column can be used to sort the data by column. The search box can be used to search for specific data within the table (for instance, search by a known piRNA sequence). Please use the download box towards the right to save this information in a user-friendly text (.txt) format.

The mouse sequence table contains the following information from left to right: Species, Tissue, Unique piRNA ID, Sequence Content, Sequence Length, Expression, p-value, and signal value. The expression is the log2 tranformed average reads counts from the sodium periodate treated samples. The p-values and signal values are from from the peaking calling by using PePr from the comparison of sodium periodate treated samples vs. untreated samples.